Cancer Target Synergy

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Dataset available for analysis:

# Cancer Dataset ID Number of samples
1 Adrenocortical Carcinoma TCGA_ACC 79
2 Bladder Urothelial Carcinoma TCGA_BLCA 398
3 Brain Lower Grade Glioma TCGA_LGG 481
4 Breast Invasive Carcinoma TCGA_BRCA 1051
5 Breast cancer GSE25066 507
6 Breast cancer METABRIC 1971
7 Burkitt Lymphoma GSE4732 271
8 Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma TCGA_CESC 273
9 Colon Adenocarcinoma TCGA_COAD 275
10 Colon adenocarcinoma TCGA_COADREAD 367
11 Colon cancer GSE39582 556
12 Diffuse large B cell lymphoma GSE32918 244
13 Diffuse large B cell lymphoma GSE10846 402
14 Esophageal Carcinoma TCGA_ESCA 178
15 Glioblastoma GSE13041 191
16 Glioblastoma Multiforme TCGA_GBM 144
17 Glioma (high-grade ) GSE4271 77
18 Head and Neck Squamous Cell Carcinoma TCGA_HNSC 511
19 Kidney Chromophobe TCGA_KICH 65
20 Kidney Renal Clear Cell Carcinoma TCGA_KIRC 518
21 Kidney Renal Papillary Cell Carcinoma TCGA_KIRP 278
22 Kidney papillary renal cell carcinoma TCGA_KIPAN 861
23 Liver Hepatocellular Carcinoma TCGA_LIHC 343
24 Lung Adenocarcinoma GSE36471 115
25 Lung Adenocarcinoma TCGA_LUAD 492
26 Lung Squamous Cell Carcinoma TCGA_LUSC 474
27 Lung adenocarcinoma stage I-II GSE31210 226
28 Lung cancer GSE30219 289
29 Mesothelioma TCGA_MESO 84
30 Ovarian Cancer GSE13876 415
31 Ovarian Cancer (Epithelial) GSE49997 194
32 Ovarian Serous Cystadenocarcinoma TCGA_OV 294
33 Pancreatic Adenocarcinoma TCGA_PAAD 172
34 Pheochromocytoma and Paraganglioma TCGA_PCPG 172
35 Prostate Adenocarcinoma TCGA_PRAD 494
36 Prostate Cancer GSE16560 281
37 Rectum Adenocarcinoma TCGA_READ 92
38 Sarcoma TCGA_SARC 255
39 Skin Cutaneous Melanoma TCGA_SKCM 98
40 Stomach Adenocarcinoma TCGA_STAD 375
41 Testicular Germ Cell Tumors TCGA_TGCT 130
42 Thymoma TCGA_THYM 118
43 Thyroid Carcinoma TCGA_THCA 498
44 Urothelial Carcinoma GSE32894 224
45 Uterine Carcinosarcoma TCGA_UCS 55
46 Uterine Corpus Endometrial Carcinoma TCGA_UCEC 162

Dataset details:

Cancer Dataset ID Number of samples Clinical Variables
Adrenocortical Carcinoma TCGA_ACC 79 pathologyNstage = "n0" (68)

pathologicstage = "stage ii" (37)

histologicaltype = "adrenocortical carcinoma- usual type" (75)

residualtumor = "r0" (55)

race = "white" (66)

pathologyTstage = "t2" (42)

radiationtherapy = "no" (59)

gender = "male" (31)
gender = "female" (48)

Bladder Urothelial Carcinoma TCGA_BLCA 398 pathologicstage = "stage iv" (132)
pathologicstage = "stage iii" (138)
pathologicstage = "stage ii" (124)

pathologyNstage = "nx" (36)
pathologyNstage = "n2" (75)
pathologyNstage = "n0" (229)
pathologyNstage = "n1" (46)

race = "white" (318)
race = "black or african american" (23)
race = "asian" (40)

pathologyMstage = "mx" (196)
pathologyMstage = "m0" (189)

radiationtherapy = "no" (355)

ethnicity = "not hispanic or latino" (359)

gender = "female" (105)
gender = "male" (293)

Brain Lower Grade Glioma TCGA_LGG 481 histologicaltype = "oligodendroglioma" (174)
histologicaltype = "astrocytoma" (180)
histologicaltype = "oligoastrocytoma" (127)

karnofskyperformancescore = "90" (119)
karnofskyperformancescore = "70" (25)
karnofskyperformancescore = "80" (57)
karnofskyperformancescore = "100" (81)

race = "white" (445)

ethnicity = "not hispanic or latino" (422)
ethnicity = "hispanic or latino" (28)

radiationtherapy = "yes" (294)
radiationtherapy = "no" (171)

gender = "female" (218)
gender = "male" (263)

Breast Invasive Carcinoma TCGA_BRCA 1051 pathologyNstage = "n2" (47)
pathologyNstage = "n1b" (30)
pathologyNstage = "n1a" (114)
pathologyNstage = "n0 (i-)" (121)
pathologyNstage = "n0" (214)
pathologyNstage = "n2a" (45)
pathologyNstage = "n1" (94)

ethnicity = "not hispanic or latino" (847)
ethnicity = "hispanic or latino" (39)

pathologicstage = "stage i" (69)
pathologicstage = "stage iiia" (112)
pathologicstage = "stage iib" (175)
pathologicstage = "stage iiic" (33)
pathologicstage = "stage ia" (55)
pathologicstage = "stage iia" (264)

histologicaltype = "infiltrating ductal carcinoma" (745)
histologicaltype = "infiltrating lobular carcinoma" (202)
histologicaltype = "other specify" (44)
histologicaltype = "mixed histology (please specify)" (29)

pathologyMstage = "mx" (161)
pathologyMstage = "m1" (21)
pathologyMstage = "m0" (863)

race = "white" (727)
race = "asian" (57)
race = "black or african american" (180)

pathologyTstage = "t3" (81)
pathologyTstage = "t2" (450)
pathologyTstage = "t1" (34)
pathologyTstage = "t1c" (161)

radiationtherapy = "yes" (552)
radiationtherapy = "no" (420)

gender = "female" (1039)

Breast cancer GSE25066 507 chemosensitivity_prediction = "Rx Insensitive" (338)
chemosensitivity_prediction = "Rx Sensitive" (169)

clinical_nodal_status = "N1" (244)
clinical_nodal_status = "N3" (40)
clinical_nodal_status = "N0" (157)
clinical_nodal_status = "N2" (66)

ggi_class = "Low" (172)
ggi_class = "High" (335)

clinical_ajcc_stage = "IIIB" (80)
clinical_ajcc_stage = "IIA" (121)
clinical_ajcc_stage = "IIIC" (22)
clinical_ajcc_stage = "IIB" (151)
clinical_ajcc_stage = "IIIA" (121)

grade = "1" (32)
grade = "3" (259)
grade = "2" (179)

erbb2_status = "N" (478)
erbb2_status = "P" (29)

set_class = "SET-Int" (41)
set_class = "SET-High" (24)
set_class = "SET-Low" (442)

er_status_ihc_esr1_forindeterminate = "N" (134)
er_status_ihc_esr1_forindeterminate = "P" (175)

er_status_ihc = "N" (205)
er_status_ihc = "P" (296)

rcb_0_i_prediction = "RCB-II/III" (278)
rcb_0_i_prediction = "RCB-0/I" (229)

pam50_class = "Her2" (37)
pam50_class = "LumB" (78)
pam50_class = "LumA" (159)
pam50_class = "Basal" (189)
pam50_class = "Normal" (44)

pathologic_response_rcb_class = "RCB-II" (189)
pathologic_response_rcb_class = "RCB-0/I" (118)
pathologic_response_rcb_class = "RCB-III" (110)

pathologic_response_pcr_rd = "pCR" (99)
pathologic_response_pcr_rd = "RD" (389)

esr1_status = "N" (217)
esr1_status = "P" (290)

dlda30_prediction = "pCR" (196)
dlda30_prediction = "RD" (311)

clinical_t_stage = "T1" (30)
clinical_t_stage = "T4" (74)
clinical_t_stage = "T3" (145)
clinical_t_stage = "T2" (255)

pr_status_ihc = "N" (258)
pr_status_ihc = "P" (242)

Breast cancer METABRIC 1971 stage = "1" (362)
stage = "3" (86)
stage = "0" (492)
stage = "2" (573)
stage = "null" (448)

lymph_nodes_positive = "6" (37)
lymph_nodes_positive = "4" (101)
lymph_nodes_positive = "1" (336)
lymph_nodes_positive = "3" (115)
lymph_nodes_positive = "0" (1032)
lymph_nodes_positive = "7" (21)
lymph_nodes_positive = "2" (168)
lymph_nodes_positive = "5" (35)

cellularity = "high" (962)
cellularity = "moderate" (729)
cellularity = "low" (216)

P53_mutation_status = "MUT" (99)
P53_mutation_status = "WT" (704)

grade = "1" (166)
grade = "3" (950)
grade = "2" (767)
grade = "null" (88)

Treatment = "HT" (418)
Treatment = "RT" (228)
Treatment = "HT/RT" (605)
Treatment = "CT" (53)
Treatment = "CT/HT" (31)
Treatment = "CT/HT/RT" (164)
Treatment = "CT/RT" (169)

Genefu = "ER+/HER2- High Prolif" (364)
Genefu = "ER-/HER2-" (151)
Genefu = "ER+/HER2- Low Prolif" (358)
Genefu = "HER2+" (107)

ER.Expr = "-" (469)
ER.Expr = "+" (1502)

group = "4" (487)
group = "1" (785)
group = "3" (250)
group = "2" (442)

Her2.Expr = "-" (1727)
Her2.Expr = "+" (244)

menopausal_status_inferred = "pre" (432)
menopausal_status_inferred = "post" (1529)

HER2_IHC_status = "1" (656)
HER2_IHC_status = "3" (117)
HER2_IHC_status = "2" (27)
HER2_IHC_status = "null" (1166)

ER_IHC_status = "pos" (1494)
ER_IHC_status = "neg" (434)
ER_IHC_status = "null" (43)

histological_type = "IDC-MED" (31)
histological_type = "IDC-TUB" (61)
histological_type = "IDC-MUC" (46)
histological_type = "IDC+ILC" (88)
histological_type = "ILC" (147)
histological_type = "IDC" (1544)

HER2_SNP6_state = "GAIN" (435)
HER2_SNP6_state = "LOSS" (100)
HER2_SNP6_state = "NEUT" (1431)

Pam50Subtype = "Her2" (237)
Pam50Subtype = "LumB" (488)
Pam50Subtype = "LumA" (709)
Pam50Subtype = "Basal" (329)
Pam50Subtype = "Normal" (202)

Site = "4" (238)
Site = "1" (529)
Site = "3" (763)
Site = "2" (270)
Site = "5" (171)

PR.Expr = "-" (933)
PR.Expr = "+" (1038)

Burkitt Lymphoma GSE4732 271 Clinicalinfo:ECOGperformancestatus = "1" (134)
Clinicalinfo:ECOGperformancestatus = "0" (53)
Clinicalinfo:ECOGperformancestatus = "2" (48)

Clinicalinfo:Stage = "3/4" (121)
Clinicalinfo:Stage = "1/2" (132)

Gender = "female" (109)
Gender = "male" (162)

Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma TCGA_CESC 273 pregnancyspontaneousabortioncount = "1" (43)
pregnancyspontaneousabortioncount = "0" (90)

lymphovascularinvolvement = "present" (73)
lymphovascularinvolvement = "absent" (65)

pregnancytherapeuticabortioncount = "0" (78)

ethnicity = "not hispanic or latino" (151)
ethnicity = "hispanic or latino" (22)

historyhormonalcontraceptivesuse = "former user" (53)
historyhormonalcontraceptivesuse = "never used" (84)

poslymphnodelocation = "other location specify" (39)

pathologyMstage = "mx" (122)
pathologyMstage = "m0" (101)

race = "white" (191)
race = "black or african american" (30)

neoplasmhistologicgrade = "gx" (24)
neoplasmhistologicgrade = "g2" (126)
neoplasmhistologicgrade = "g3" (104)

pregnanciescountstillbirth = "0" (105)

chemoconcurrenttype = "cisplatin" (102)

pathologyNstage = "nx" (64)
pathologyNstage = "n0" (118)
pathologyNstage = "n1" (53)

tumorstatus = "with tumor" (75)
tumorstatus = "tumor free" (187)

menopausestatus = "post (prior bilateral ovariectomy or >12 mo since lmp with no prior hysterectomy)" (77)
menopausestatus = "peri (6-12 months since last menstrual period)" (24)
menopausestatus = "pre (<6 months since lmp and no prior bilateral ovariectomy and not on estrogen replacement)" (120)

pregnanciescountectopic = "0" (104)

tobaccosmokinghistory = "4" (37)
tobaccosmokinghistory = "1" (136)
tobaccosmokinghistory = "2" (61)

histologicaltype = "cervical squamous cell carcinoma" (226)

keratinizationsquamouscell = "keratinizing squamous cell carcinoma" (48)
keratinizationsquamouscell = "non-keratinizing squamous cell carcinoma" (105)

corpusinvolvement = "absent" (90)

radiationtherapy = "yes" (127)
radiationtherapy = "no" (51)

Colon Adenocarcinoma TCGA_COAD 275 pathologyNstage = "n2" (25)
pathologyNstage = "n0" (161)
pathologyNstage = "n1" (43)

ethnicity = "not hispanic or latino" (239)

histologicaltype = "colon mucinous adenocarcinoma" (36)
histologicaltype = "colon adenocarcinoma" (236)

residualtumor = "rx" (23)
residualtumor = "r0" (177)

race = "white" (187)
race = "black or african american" (54)

pathologyMstage = "mx" (47)
pathologyMstage = "m1" (27)
pathologyMstage = "m0" (187)

pathologyTstage = "t3" (188)
pathologyTstage = "t2" (43)

radiationtherapy = "no" (240)

gender = "female" (122)
gender = "male" (153)

Colon adenocarcinoma TCGA_COADREAD 367 pathologyNstage = "n2" (36)
pathologyNstage = "n0" (201)
pathologyNstage = "n1" (62)

ethnicity = "not hispanic or latino" (316)

residualtumor = "rx" (28)
residualtumor = "r0" (239)

histologicaltype = "colon mucinous adenocarcinoma" (36)
histologicaltype = "rectal adenocarcinoma" (85)
histologicaltype = "colon adenocarcinoma" (236)

tumortissuesite = "rectum" (90)
tumortissuesite = "colon" (275)

pathologyMstage = "mx" (61)
pathologyMstage = "m1" (37)
pathologyMstage = "m0" (251)

pathologyTstage = "t3" (252)
pathologyTstage = "t2" (56)
pathologyTstage = "t4a" (25)

radiationtherapy = "N/A" (42)
radiationtherapy = "no" (310)

gender = "female" (163)
gender = "male" (204)

Colon cancer GSE39582 556 tumor.location = "distal" (337)
tumor.location = "proximal" (219)

kras.mutation = "M" (213)
kras.mutation = "WT" (322)

tnm.n = "N1" (131)
tnm.n = "N0" (295)
tnm.n = "N2" (98)

tnm.m = "M0" (474)
tnm.m = "M1" (60)

tnm.stage = "1" (32)
tnm.stage = "4" (59)
tnm.stage = "3" (203)
tnm.stage = "2" (258)

cimp.status = "-" (398)
cimp.status = "+" (88)

Sex = "F" (249)
Sex = "M" (307)

tp53.mutation = "M" (189)
tp53.mutation = "WT" (159)

chemotherapy.adjuvant.type = "FOLFOX" (23)
chemotherapy.adjuvant.type = "5FU" (79)
chemotherapy.adjuvant.type = "FUFOL" (51)
chemotherapy.adjuvant.type = "NA" (389)

braf.mutation = "M" (49)
braf.mutation = "WT" (453)

cit.molecularsubtype = "C6" (60)
cit.molecularsubtype = "C3" (74)
cit.molecularsubtype = "C5" (150)
cit.molecularsubtype = "C4" (58)
cit.molecularsubtype = "C2" (100)
cit.molecularsubtype = "C1" (114)

chemotherapy.adjuvant = "N" (307)
chemotherapy.adjuvant = "Y" (233)

cin.status = "-" (107)
cin.status = "+" (347)

tnm.t = "T4" (117)
tnm.t = "T2" (44)
tnm.t = "T3" (360)

mmr.status = "pMMR" (439)
mmr.status = "dMMR" (71)

Diffuse large B cell lymphoma GSE32918 244 predictedclass = "TypeIII" (46)
predictedclass = "ABC" (79)
predictedclass = "GCB" (119)

Sex = "female" (102)
Sex = "male" (142)

Diffuse large B cell lymphoma GSE10846 402 Clinicalinfo:Numberofextranodalsites = "1" (110)
Clinicalinfo:Numberofextranodalsites = "0" (233)

Clinicalinfo:ECOGperformancestatus = "1" (208)
Clinicalinfo:ECOGperformancestatus = "3" (28)
Clinicalinfo:ECOGperformancestatus = "0" (84)
Clinicalinfo:ECOGperformancestatus = "2" (57)

Clinicalinfo:Stage = "1" (66)
Clinicalinfo:Stage = "4" (115)
Clinicalinfo:Stage = "3" (94)
Clinicalinfo:Stage = "2" (121)

Gender = "female" (169)
Gender = "male" (216)

Clinicalinfo:Chemotherapy = "R-CHOP-Like Regimen" (227)
Clinicalinfo:Chemotherapy = "CHOP-Like Regimen" (175)

Esophageal Carcinoma TCGA_ESCA 178 pathologyNstage = "n0" (72)
pathologyNstage = "n1" (67)

ethnicity = "not hispanic or latino" (84)

residualtumor = "r0" (131)

histologicaltype = "esophagus squamous cell carcinoma" (90)
histologicaltype = "esophagus adenocarcinoma nos" (88)

race = "white" (109)
race = "asian" (44)

pathologyMstage = "m0" (130)

pathologyTstage = "t3" (85)
pathologyTstage = "t2" (41)
pathologyTstage = "t1" (30)

radiationtherapy = "yes" (43)
radiationtherapy = "no" (119)

gender = "female" (26)
gender = "male" (152)

Glioblastoma GSE13041 191 HC = "Pro" (48)
HC = "PN" (56)
HC = "Mes" (69)

HCcoded = "non-PN" (135)
HCcoded = "PN" (56)

Gender = "F" (74)
Gender = "M" (117)

Glioblastoma Multiforme TCGA_GBM 144 histologicaltype = "untreated primary (de novo) gbm" (142)

race = "white" (130)

ethnicity = "not hispanic or latino" (119)

radiationtherapy = "yes" (121)

gender = "female" (51)
gender = "male" (93)

Glioma (high-grade ) GSE4271 77 whograde = "III" (21)
whograde = "IV with necrosis" (50)

Sex = "F" (25)
Sex = "M" (52)

Head and Neck Squamous Cell Carcinoma TCGA_HNSC 511 pathologyNstage = "n2c" (48)
pathologyNstage = "nx" (75)
pathologyNstage = "n0" (173)
pathologyNstage = "n2b" (95)
pathologyNstage = "n1" (67)

ethnicity = "not hispanic or latino" (451)
ethnicity = "hispanic or latino" (24)

pathologicstage = "stage i" (27)
pathologicstage = "stage iii" (81)
pathologicstage = "stage ii" (73)
pathologicstage = "stage iva" (245)

histologicaltype = "head & neck squamous cell carcinoma" (500)

race = "white" (439)
race = "black or african american" (46)

pathologyMstage = "mx" (61)
pathologyMstage = "m0" (181)

pathologyTstage = "tx" (39)
pathologyTstage = "t3" (99)
pathologyTstage = "t2" (132)
pathologyTstage = "t4a" (155)
pathologyTstage = "t1" (47)

radiationtherapy = "yes" (296)
radiationtherapy = "no" (155)

gender = "female" (133)
gender = "male" (378)

Kidney Chromophobe TCGA_KICH 65 pathologyNstage = "nx" (21)
pathologyNstage = "n0" (39)

pathologicstage = "stage ii" (25)

race = "white" (57)

pathologyMstage = "m0" (34)

gender = "female" (27)
gender = "male" (38)

Kidney Renal Clear Cell Carcinoma TCGA_KIRC 518 pathologicstage = "stage iv" (84)
pathologicstage = "stage i" (259)
pathologicstage = "stage iii" (117)
pathologicstage = "stage ii" (56)

pathologyNstage = "nx" (271)
pathologyNstage = "n0" (231)

race = "white" (452)
race = "black or african american" (51)

pathologyMstage = "m1" (79)
pathologyMstage = "m0" (411)

radiationtherapy = "no" (137)

ethnicity = "not hispanic or latino" (344)
ethnicity = "hispanic or latino" (26)

gender = "female" (179)
gender = "male" (339)

Kidney Renal Papillary Cell Carcinoma TCGA_KIRP 278 karnofskyperformancescore = "100" (37)

pathologicstage = "stage i" (166)
pathologicstage = "stage iii" (48)

pathologyNstage = "nx" (205)
pathologyNstage = "n0" (45)
pathologyNstage = "n1" (23)

race = "white" (199)
race = "black or african american" (58)

pathologyMstage = "mx" (164)
pathologyMstage = "m0" (91)

radiationtherapy = "no" (206)

ethnicity = "not hispanic or latino" (232)

gender = "female" (71)
gender = "male" (207)

Kidney papillary renal cell carcinoma TCGA_KIPAN 861 histologicaltype = "kidney papillary renal cell carcinoma" (278)
histologicaltype = "kidney chromophobe" (65)
histologicaltype = "kidney clear cell renal carcinoma" (518)

pathologicstage = "stage iv" (105)
pathologicstage = "stage i" (445)
pathologicstage = "stage iii" (179)
pathologicstage = "stage ii" (101)

pathologyNstage = "nx" (497)
pathologyNstage = "n0" (315)
pathologyNstage = "n1" (42)

race = "white" (708)
race = "black or african american" (113)

pathologyMstage = "mx" (199)
pathologyMstage = "m1" (90)
pathologyMstage = "m0" (536)

radiationtherapy = "no" (408)

ethnicity = "not hispanic or latino" (607)
ethnicity = "hispanic or latino" (41)

gender = "female" (277)
gender = "male" (584)

Liver Hepatocellular Carcinoma TCGA_LIHC 343 pathologyNstage = "nx" (100)
pathologyNstage = "n0" (239)

ethnicity = "not hispanic or latino" (310)

residualtumor = "r0" (303)

pathologicstage = "stage iiia" (60)
pathologicstage = "stage i" (161)
pathologicstage = "stage ii" (77)

histologicaltype = "hepatocellular carcinoma" (336)

race = "white" (169)
race = "asian" (148)

pathologyMstage = "mx" (95)
pathologyMstage = "m0" (245)

pathologyTstage = "t3" (43)
pathologyTstage = "t2" (82)
pathologyTstage = "t1" (168)
pathologyTstage = "t3a" (26)

radiationtherapy = "no" (323)

gender = "female" (110)
gender = "male" (233)

Lung Adenocarcinoma GSE36471 115 kras(0='wt':01='mutated') = "0" (88)

subtype = "squamoid" (29)
subtype = "bronchioid" (46)
subtype = "magnoid" (40)

tp53(0='wt':1='mutated') = "1" (31)
tp53(0='wt':1='mutated') = "0" (75)

grade = "3" (43)
grade = "2" (58)

egfr(0='wt':1='mutated') = "0" (70)

Sex = "F" (50)
Sex = "M" (49)

Lung Adenocarcinoma TCGA_LUAD 492 pathologyNstage = "n2" (68)
pathologyNstage = "n0" (318)
pathologyNstage = "n1" (93)

ethnicity = "not hispanic or latino" (374)

residualtumor = "rx" (23)
residualtumor = "r0" (328)

pathologicstage = "stage iv" (25)
pathologicstage = "stage ib" (131)
pathologicstage = "stage iiia" (69)
pathologicstage = "stage iib" (67)
pathologicstage = "stage ia" (129)
pathologicstage = "stage iia" (48)

karnofskyperformancescore = "90" (31)
karnofskyperformancescore = "80" (28)
karnofskyperformancescore = "100" (43)

race = "white" (377)
race = "black or african american" (52)

pathologyMstage = "mx" (138)
pathologyMstage = "m0" (326)

pathologyTstage = "t2b" (27)
pathologyTstage = "t3" (43)
pathologyTstage = "t2" (157)
pathologyTstage = "t1b" (53)
pathologyTstage = "t2a" (80)
pathologyTstage = "t1" (65)
pathologyTstage = "t1a" (46)

radiationtherapy = "yes" (60)
radiationtherapy = "no" (394)

gender = "male" (229)
gender = "female" (263)

Lung Squamous Cell Carcinoma TCGA_LUSC 474 pathologyNstage = "n2" (39)
pathologyNstage = "n0" (300)
pathologyNstage = "n1" (125)

ethnicity = "not hispanic or latino" (301)

histologicaltype = "lung squamous cell carcinoma- not otherwise specified (nos)" (453)

residualtumor = "rx" (21)
residualtumor = "r0" (378)

race = "white" (336)
race = "black or african american" (24)

pathologyMstage = "mx" (73)
pathologyMstage = "m0" (394)

pathologyTstage = "t2b" (32)
pathologyTstage = "t3" (68)
pathologyTstage = "t2" (161)
pathologyTstage = "t4" (21)
pathologyTstage = "t1b" (37)
pathologyTstage = "t2a" (84)
pathologyTstage = "t1" (50)
pathologyTstage = "t1a" (21)

radiationtherapy = "yes" (53)
radiationtherapy = "no" (363)

gender = "female" (122)
gender = "male" (352)

Lung adenocarcinoma stage I-II GSE31210 226 pathologicalstage = "IA" (114)
pathologicalstage = "IB" (54)
pathologicalstage = "II" (58)

myc = "Low" (207)

pstageiorii = "I" (168)
pstageiorii = "II" (58)

smokingstatus = "Never-smoker" (115)
smokingstatus = "Ever-smoker" (111)

relapse = "not relapsed" (162)
relapse = "relapsed" (64)

genealterationstatus = "EGFR/KRAS/ALK -" (68)
genealterationstatus = "EGFR mutation +" (127)

gender = "male" (105)
gender = "female" (121)

Lung cancer GSE30219 289 pnstage = "N1" (52)
pnstage = "N0" (195)
pnstage = "N2" (30)

ptstage = "T4" (21)
ptstage = "T1" (163)
ptstage = "T3" (31)
ptstage = "T2" (68)

histology = "SCC" (21)
histology = "CARCI" (24)
histology = "LCNE" (56)
histology = "SQC" (61)
histology = "ADC" (83)
histology = "BAS" (37)

gender = "F" (42)
gender = "M" (247)

Mesothelioma TCGA_MESO 84 pathologyNstage = "n2" (25)
pathologyNstage = "n0" (44)

pathologicstage = "stage iii" (44)

histologicaltype = "biphasic mesothelioma" (22)
histologicaltype = "epithelioid mesothelioma" (56)

race = "white" (82)

pathologyMstage = "mx" (25)
pathologyMstage = "m0" (56)

pathologyTstage = "t3" (32)
pathologyTstage = "t2" (24)

radiationtherapy = "yes" (24)
radiationtherapy = "no" (60)

gender = "male" (68)

Ovarian Cancer GSE13876 415
Ovarian Cancer (Epithelial) GSE49997 194 residualtumor = "Yes" (57)
residualtumor = "No" (137)

peritonealcarcinomatosis = "No" (57)
peritonealcarcinomatosis = "Yes" (137)

figograde = "IV" (31)
figograde = "III" (154)

subclass = "1" (95)
subclass = "2" (99)

grade = "1&2" (50)
grade = "3" (143)

histology = "Serous" (171)
histology = "Non-serous" (23)

Ovarian Serous Cystadenocarcinoma TCGA_OV 294 tumortissuesite = "ovary" (291)

ethnicity = "not hispanic or latino" (159)

radiationtherapy = "no" (280)

Pancreatic Adenocarcinoma TCGA_PAAD 172 pathologyNstage = "n0" (47)
pathologyNstage = "n1" (116)

ethnicity = "not hispanic or latino" (125)

residualtumor = "r0" (100)
residualtumor = "r1" (53)

pathologicstage = "stage iib" (115)
pathologicstage = "stage iia" (28)

histologicaltype = "pancreas-adenocarcinoma-other subtype" (25)
histologicaltype = "pancreas-adenocarcinoma ductal type" (141)

race = "white" (151)

pathologyMstage = "mx" (90)
pathologyMstage = "m0" (78)

pathologyTstage = "t3" (139)
pathologyTstage = "t2" (21)

radiationtherapy = "yes" (44)
radiationtherapy = "no" (116)

gender = "female" (78)
gender = "male" (94)

Pheochromocytoma and Paraganglioma TCGA_PCPG 172 karnofskyperformancescore = "100" (46)

histologicaltype = "paraganglioma" (29)
histologicaltype = "pheochromocytoma" (143)

tumortissuesite = "adrenal gland" (142)
tumortissuesite = "extra-adrenal site" (30)

race = "white" (133)

ethnicity = "not hispanic or latino" (126)

radiationtherapy = "no" (166)

gender = "male" (75)
gender = "female" (97)

Prostate Adenocarcinoma TCGA_PRAD 494 gleasonscore = "6" (45)
gleasonscore = "8" (64)
gleasonscore = "7" (246)
gleasonscore = "9" (135)

vitalstatus = "0" (484)

residualtumor = "r0" (314)
residualtumor = "r1" (146)

histologicaltype = "prostate adenocarcinoma acinar type" (479)

pathologyNstage = "n0" (343)
pathologyNstage = "n1" (79)

race = "white" (146)

pathologyTstage = "t2c" (164)
pathologyTstage = "t3b" (133)
pathologyTstage = "t3a" (158)

radiationtherapy = "yes" (59)
radiationtherapy = "no" (393)

Prostate Cancer GSE16560 281 major.gleason = "4" (104)
major.gleason = "3" (163)

minor.gleason = "4" (115)
minor.gleason = "3" (121)
minor.gleason = "5" (44)

fusion = "1" (46)
fusion = "0" (226)

batch = "6" (30)
batch = "1" (39)
batch = "4" (64)
batch = "3" (54)
batch = "2" (38)
batch = "5" (56)

extreme = "Indolent" (116)
extreme = "Lethal" (165)

gleason = "8" (27)
gleason = "6" (83)
gleason = "7" (117)
gleason = "9" (49)

Rectum Adenocarcinoma TCGA_READ 92 residualtumor = "r0" (62)

histologicaltype = "rectal adenocarcinoma" (85)

pathologyNstage = "n0" (40)

pathologyMstage = "m0" (64)

pathologyTstage = "t3" (64)

radiationtherapy = "no" (70)

ethnicity = "not hispanic or latino" (77)

gender = "female" (41)
gender = "male" (51)

Sarcoma TCGA_SARC 255 residualtumor = "rx" (25)
residualtumor = "r0" (153)
residualtumor = "r1" (69)

race = "white" (224)

ethnicity = "not hispanic or latino" (220)

radiationtherapy = "yes" (74)
radiationtherapy = "no" (175)

gender = "male" (116)
gender = "female" (139)

Skin Cutaneous Melanoma TCGA_SKCM 98 melanomaulceration = "yes" (72)

melanomaprimaryknown = "yes" (98)

pathologyMstage = "m0" (93)

race = "white" (90)

ethnicity = "not hispanic or latino" (90)

radiationtherapy = "no" (96)

gender = "female" (39)
gender = "male" (59)

Stomach Adenocarcinoma TCGA_STAD 375 residualtumor = "r0" (308)

histologicaltype = "stomach adenocarcinoma diffuse type" (65)
histologicaltype = "stomach intestinal adenocarcinoma not otherwise specified (nos)" (69)
histologicaltype = "stomach intestinal adenocarcinoma tubular type" (72)
histologicaltype = "stomach adenocarcinoma not otherwise specified (nos)" (128)

pathologyNstage = "n3a" (42)
pathologyNstage = "n2" (73)
pathologyNstage = "n0" (111)
pathologyNstage = "n3" (27)
pathologyNstage = "n1" (105)

race = "white" (234)
race = "asian" (81)

pathologyMstage = "m1" (24)
pathologyMstage = "m0" (338)

radiationtherapy = "yes" (68)
radiationtherapy = "no" (290)

ethnicity = "not hispanic or latino" (269)

gender = "female" (129)
gender = "male" (246)

Testicular Germ Cell Tumors TCGA_TGCT 130 karnofskyperformancescore = "90" (39)
karnofskyperformancescore = "100" (56)

pathologyNstage = "nx" (63)
pathologyNstage = "n0" (45)

race = "white" (117)

pathologyMstage = "m0" (112)

pathologyTstage = "t2" (50)
pathologyTstage = "t1" (74)

radiationtherapy = "yes" (21)
radiationtherapy = "no" (109)

ethnicity = "not hispanic or latino" (109)

Thymoma TCGA_THYM 118 histologicaltype = "thymoma" (118)

race = "type b2" (31)
race = "type ab" (33)

tumortissuesite = "thymus" (91)
tumortissuesite = "anterior mediastinum" (27)

ethnicity = "white" (98)

radiationtherapy = "yes" (42)
radiationtherapy = "no" (76)

gender = "female" (55)
gender = "male" (63)

Thyroid Carcinoma TCGA_THCA 498 pathologyNstage = "nx" (50)
pathologyNstage = "n1b" (73)
pathologyNstage = "n1a" (91)
pathologyNstage = "n0" (226)
pathologyNstage = "n1" (58)

ethnicity = "not hispanic or latino" (359)
ethnicity = "hispanic or latino" (37)

residualtumor = "rx" (30)
residualtumor = "r0" (380)
residualtumor = "r1" (52)

pathologicstage = "stage i" (282)
pathologicstage = "stage iii" (109)
pathologicstage = "stage ii" (51)
pathologicstage = "stage iva" (46)

histologicaltype = "thyroid papillary carcinoma - follicular (>= 99% follicular patterned)" (102)
histologicaltype = "thyroid papillary carcinoma - tall cell (>= 50% tall cell features)" (35)
histologicaltype = "thyroid papillary carcinoma - classical/usual" (354)

multifocality = "unifocal" (263)
multifocality = "multifocal" (225)

race = "white" (329)
race = "black or african american" (27)
race = "asian" (51)

pathologyMstage = "mx" (209)
pathologyMstage = "m0" (279)

extrathyroidalextension = "none" (329)
extrathyroidalextension = "minimal (t3)" (133)

pathologyTstage = "t3" (169)
pathologyTstage = "t2" (164)
pathologyTstage = "t1b" (79)
pathologyTstage = "t1" (43)

radiationtherapy = "yes" (305)
radiationtherapy = "no" (179)

radiationexposure = "no" (419)

gender = "male" (135)
gender = "female" (363)

Urothelial Carcinoma GSE32894 224 tumor_stage = "T1" (63)
tumor_stage = "Ta" (110)
tumor_stage = "T2" (40)

labeling_plate = "P5" (57)
labeling_plate = "P2" (43)
labeling_plate = "P1" (45)
labeling_plate = "P4" (59)

tumor_grade = "G1" (45)
tumor_grade = "G2" (84)
tumor_grade = "G3" (93)

molecular_subtype = "MS1a" (48)
molecular_subtype = "MS2a.2" (32)
molecular_subtype = "MS2b.1" (31)
molecular_subtype = "MS1b" (63)
molecular_subtype = "MS2a.1" (24)

gender = "F" (61)
gender = "M" (163)

Uterine Carcinosarcoma TCGA_UCS 55 histologicaltype = "uterine carcinosarcoma/ malignant mixed mullerian tumor (mmmt): nos" (23)

race = "white" (43)

ethnicity = "not hispanic or latino" (42)

radiationtherapy = "yes" (25)
radiationtherapy = "no" (27)

Uterine Corpus Endometrial Carcinoma TCGA_UCEC 162 residualtumor = "N/A" (30)
residualtumor = "r0" (107)

histologicaltype = "serous endometrial adenocarcinoma" (54)
histologicaltype = "endometrioid endometrial adenocarcinoma" (96)

tumortissuesite = "endometrial" (161)

radiationtherapy = "yes" (79)
radiationtherapy = "no" (72)

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