Cancer Target Synergy: Pathway Screening

You may suspect that the gene of your interest interacts with genes from a given pathway. SynTarget allows you to test this complex hypothesis and to identify genes from the pathway whose expression correlates synergistically with the expression of your gene significantly affecting survival in patients of selected cancer type.


Please type pathway name keyword (for example "mevalonate"):

pathway help


Dataset available for analysis:

# Cancer Dataset ID Number of samples
1 Adrenocortical Carcinoma TCGA_ACC 79
2 Bladder Urothelial Carcinoma TCGA_BLCA 398
3 Brain Lower Grade Glioma TCGA_LGG 481
4 Breast Invasive Carcinoma TCGA_BRCA 1051
5 Breast cancer METABRIC 1971
6 Breast cancer GSE25066 507
7 Burkitt Lymphoma GSE4732 271
8 Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma TCGA_CESC 273
9 Colon Adenocarcinoma TCGA_COAD 275
10 Colon adenocarcinoma TCGA_COADREAD 367
11 Colon cancer GSE39582 556
12 Diffuse large B cell lymphoma GSE10846 402
13 Diffuse large B cell lymphoma GSE32918 244
14 Esophageal Carcinoma TCGA_ESCA 178
15 Glioblastoma GSE13041 191
16 Glioblastoma Multiforme TCGA_GBM 144
17 Glioma (high-grade ) GSE4271 77
18 Head and Neck Squamous Cell Carcinoma TCGA_HNSC 511
19 Kidney Chromophobe TCGA_KICH 65
20 Kidney Renal Clear Cell Carcinoma TCGA_KIRC 518
21 Kidney Renal Papillary Cell Carcinoma TCGA_KIRP 278
22 Kidney papillary renal cell carcinoma TCGA_KIPAN 861
23 Liver Hepatocellular Carcinoma TCGA_LIHC 343
24 Lung Adenocarcinoma TCGA_LUAD 492
25 Lung Adenocarcinoma GSE36471 115
26 Lung Squamous Cell Carcinoma TCGA_LUSC 474
27 Lung adenocarcinoma stage I-II GSE31210 226
28 Lung cancer GSE30219 289
29 Mesothelioma TCGA_MESO 84
30 Ovarian Cancer GSE13876 415
31 Ovarian Cancer (Epithelial) GSE49997 194
32 Ovarian Serous Cystadenocarcinoma TCGA_OV 294
33 Pancreatic Adenocarcinoma TCGA_PAAD 172
34 Pheochromocytoma and Paraganglioma TCGA_PCPG 172
35 Prostate Adenocarcinoma TCGA_PRAD 494
36 Prostate Cancer GSE16560 281
37 Rectum Adenocarcinoma TCGA_READ 92
38 Sarcoma TCGA_SARC 255
39 Skin Cutaneous Melanoma TCGA_SKCM 98
40 Stomach Adenocarcinoma TCGA_STAD 375
41 Testicular Germ Cell Tumors TCGA_TGCT 130
42 Thymoma TCGA_THYM 118
43 Thyroid Carcinoma TCGA_THCA 498
44 Urothelial Carcinoma GSE32894 224
45 Uterine Carcinosarcoma TCGA_UCS 55
46 Uterine Corpus Endometrial Carcinoma TCGA_UCEC 162

Dataset details:

Cancer Dataset ID Number of samples Clinical Variables
Adrenocortical Carcinoma TCGA_ACC 79 pathologyTstage = "t2" (42)

gender = "female" (48)
gender = "male" (31)

pathologicstage = "stage ii" (37)

radiationtherapy = "no" (59)

residualtumor = "r0" (55)

pathologyNstage = "n0" (68)

race = "white" (66)

histologicaltype = "adrenocortical carcinoma- usual type" (75)

Bladder Urothelial Carcinoma TCGA_BLCA 398 pathologyNstage = "nx" (36)
pathologyNstage = "n1" (46)
pathologyNstage = "n2" (75)
pathologyNstage = "n0" (229)

gender = "male" (293)
gender = "female" (105)

pathologicstage = "stage iv" (132)
pathologicstage = "stage iii" (138)
pathologicstage = "stage ii" (124)

radiationtherapy = "no" (355)

ethnicity = "not hispanic or latino" (359)

race = "black or african american" (23)
race = "asian" (40)
race = "white" (318)

pathologyMstage = "mx" (196)
pathologyMstage = "m0" (189)

Brain Lower Grade Glioma TCGA_LGG 481 radiationtherapy = "no" (171)
radiationtherapy = "yes" (294)

ethnicity = "not hispanic or latino" (422)
ethnicity = "hispanic or latino" (28)

karnofskyperformancescore = "90" (119)
karnofskyperformancescore = "70" (25)
karnofskyperformancescore = "100" (81)
karnofskyperformancescore = "80" (57)

race = "white" (445)

histologicaltype = "astrocytoma" (180)
histologicaltype = "oligodendroglioma" (174)
histologicaltype = "oligoastrocytoma" (127)

gender = "female" (218)
gender = "male" (263)

Breast Invasive Carcinoma TCGA_BRCA 1051 histologicaltype = "mixed histology (please specify)" (29)
histologicaltype = "other specify" (44)
histologicaltype = "infiltrating lobular carcinoma" (202)
histologicaltype = "infiltrating ductal carcinoma" (745)

race = "black or african american" (180)
race = "asian" (57)
race = "white" (727)

pathologyNstage = "n1b" (30)
pathologyNstage = "n2a" (45)
pathologyNstage = "n1" (94)
pathologyNstage = "n1a" (114)
pathologyNstage = "n0" (214)
pathologyNstage = "n2" (47)
pathologyNstage = "n0 (i-)" (121)

pathologyMstage = "m0" (863)
pathologyMstage = "mx" (161)
pathologyMstage = "m1" (21)

pathologicstage = "stage iiia" (112)
pathologicstage = "stage iiic" (33)
pathologicstage = "stage iia" (264)
pathologicstage = "stage iib" (175)
pathologicstage = "stage ia" (55)
pathologicstage = "stage i" (69)

ethnicity = "hispanic or latino" (39)
ethnicity = "not hispanic or latino" (847)

radiationtherapy = "yes" (552)
radiationtherapy = "no" (420)

gender = "female" (1039)

pathologyTstage = "t2" (450)
pathologyTstage = "t1" (34)
pathologyTstage = "t3" (81)
pathologyTstage = "t1c" (161)

Breast cancer METABRIC 1971 ER.Expr = "-" (469)
ER.Expr = "+" (1502)

ER_IHC_status = "pos" (1494)
ER_IHC_status = "null" (43)
ER_IHC_status = "neg" (434)

lymph_nodes_positive = "5" (35)
lymph_nodes_positive = "2" (168)
lymph_nodes_positive = "4" (101)
lymph_nodes_positive = "7" (21)
lymph_nodes_positive = "3" (115)
lymph_nodes_positive = "6" (37)
lymph_nodes_positive = "1" (336)
lymph_nodes_positive = "0" (1032)

cellularity = "moderate" (729)
cellularity = "low" (216)
cellularity = "high" (962)

histological_type = "IDC+ILC" (88)
histological_type = "IDC-MUC" (46)
histological_type = "IDC" (1544)
histological_type = "ILC" (147)
histological_type = "IDC-TUB" (61)
histological_type = "IDC-MED" (31)

Pam50Subtype = "LumA" (709)
Pam50Subtype = "LumB" (488)
Pam50Subtype = "Her2" (237)
Pam50Subtype = "Normal" (202)
Pam50Subtype = "Basal" (329)

P53_mutation_status = "MUT" (99)
P53_mutation_status = "WT" (704)

HER2_SNP6_state = "NEUT" (1431)
HER2_SNP6_state = "GAIN" (435)
HER2_SNP6_state = "LOSS" (100)

group = "2" (442)
group = "1" (785)
group = "4" (487)
group = "3" (250)

PR.Expr = "+" (1038)
PR.Expr = "-" (933)

stage = "2" (573)
stage = "1" (362)
stage = "0" (492)
stage = "null" (448)
stage = "3" (86)

Genefu = "ER-/HER2-" (151)
Genefu = "ER+/HER2- Low Prolif" (358)
Genefu = "HER2+" (107)
Genefu = "ER+/HER2- High Prolif" (364)

Site = "5" (171)
Site = "2" (270)
Site = "1" (529)
Site = "4" (238)
Site = "3" (763)

Treatment = "HT/RT" (605)
Treatment = "CT/HT" (31)
Treatment = "CT" (53)
Treatment = "CT/HT/RT" (164)
Treatment = "CT/RT" (169)
Treatment = "HT" (418)
Treatment = "RT" (228)

Her2.Expr = "-" (1727)
Her2.Expr = "+" (244)

HER2_IHC_status = "1" (656)
HER2_IHC_status = "2" (27)
HER2_IHC_status = "null" (1166)
HER2_IHC_status = "3" (117)

grade = "1" (166)
grade = "2" (767)
grade = "null" (88)
grade = "3" (950)

menopausal_status_inferred = "pre" (432)
menopausal_status_inferred = "post" (1529)

Breast cancer GSE25066 507 dlda30_prediction = "RD" (311)
dlda30_prediction = "pCR" (196)

rcb_0_i_prediction = "RCB-II/III" (278)
rcb_0_i_prediction = "RCB-0/I" (229)

esr1_status = "P" (290)
esr1_status = "N" (217)

pam50_class = "Normal" (44)
pam50_class = "Basal" (189)
pam50_class = "LumA" (159)
pam50_class = "LumB" (78)
pam50_class = "Her2" (37)

erbb2_status = "N" (478)
erbb2_status = "P" (29)

pathologic_response_pcr_rd = "pCR" (99)
pathologic_response_pcr_rd = "RD" (389)

ggi_class = "High" (335)
ggi_class = "Low" (172)

pr_status_ihc = "N" (258)
pr_status_ihc = "P" (242)

grade = "3" (259)
grade = "1" (32)
grade = "2" (179)

clinical_nodal_status = "N2" (66)
clinical_nodal_status = "N3" (40)
clinical_nodal_status = "N1" (244)
clinical_nodal_status = "N0" (157)

chemosensitivity_prediction = "Rx Sensitive" (169)
chemosensitivity_prediction = "Rx Insensitive" (338)

clinical_t_stage = "T2" (255)
clinical_t_stage = "T1" (30)
clinical_t_stage = "T4" (74)
clinical_t_stage = "T3" (145)

set_class = "SET-High" (24)
set_class = "SET-Int" (41)
set_class = "SET-Low" (442)

er_status_ihc = "N" (205)
er_status_ihc = "P" (296)

clinical_ajcc_stage = "IIA" (121)
clinical_ajcc_stage = "IIB" (151)
clinical_ajcc_stage = "IIIC" (22)
clinical_ajcc_stage = "IIIA" (121)
clinical_ajcc_stage = "IIIB" (80)

er_status_ihc_esr1_forindeterminate = "N" (134)
er_status_ihc_esr1_forindeterminate = "P" (175)

pathologic_response_rcb_class = "RCB-II" (189)
pathologic_response_rcb_class = "RCB-III" (110)
pathologic_response_rcb_class = "RCB-0/I" (118)

Burkitt Lymphoma GSE4732 271 Gender = "female" (109)
Gender = "male" (162)

Clinicalinfo:Stage = "1/2" (132)
Clinicalinfo:Stage = "3/4" (121)

Clinicalinfo:ECOGperformancestatus = "0" (53)
Clinicalinfo:ECOGperformancestatus = "1" (134)
Clinicalinfo:ECOGperformancestatus = "2" (48)

Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma TCGA_CESC 273 pregnancyspontaneousabortioncount = "1" (43)
pregnancyspontaneousabortioncount = "0" (90)

tumorstatus = "with tumor" (75)
tumorstatus = "tumor free" (187)

tobaccosmokinghistory = "2" (61)
tobaccosmokinghistory = "1" (136)
tobaccosmokinghistory = "4" (37)

historyhormonalcontraceptivesuse = "former user" (53)
historyhormonalcontraceptivesuse = "never used" (84)

pregnanciescountectopic = "0" (104)

pregnancytherapeuticabortioncount = "0" (78)

histologicaltype = "cervical squamous cell carcinoma" (226)

pregnanciescountstillbirth = "0" (105)

lymphovascularinvolvement = "absent" (65)
lymphovascularinvolvement = "present" (73)

pathologyNstage = "n0" (118)
pathologyNstage = "nx" (64)
pathologyNstage = "n1" (53)

chemoconcurrenttype = "cisplatin" (102)

menopausestatus = "peri (6-12 months since last menstrual period)" (24)
menopausestatus = "pre (<6 months since lmp and no prior bilateral ovariectomy and not on estrogen replacement)" (120)
menopausestatus = "post (prior bilateral ovariectomy or >12 mo since lmp with no prior hysterectomy)" (77)

race = "white" (191)
race = "black or african american" (30)

poslymphnodelocation = "other location specify" (39)

keratinizationsquamouscell = "keratinizing squamous cell carcinoma" (48)
keratinizationsquamouscell = "non-keratinizing squamous cell carcinoma" (105)

ethnicity = "not hispanic or latino" (151)
ethnicity = "hispanic or latino" (22)

radiationtherapy = "yes" (127)
radiationtherapy = "no" (51)

corpusinvolvement = "absent" (90)

pathologyMstage = "m0" (101)
pathologyMstage = "mx" (122)

neoplasmhistologicgrade = "gx" (24)
neoplasmhistologicgrade = "g2" (126)
neoplasmhistologicgrade = "g3" (104)

Colon Adenocarcinoma TCGA_COAD 275 residualtumor = "r0" (177)
residualtumor = "rx" (23)

pathologyNstage = "n0" (161)
pathologyNstage = "n2" (25)
pathologyNstage = "n1" (43)

race = "black or african american" (54)
race = "white" (187)

histologicaltype = "colon mucinous adenocarcinoma" (36)
histologicaltype = "colon adenocarcinoma" (236)

pathologyTstage = "t2" (43)
pathologyTstage = "t3" (188)

gender = "male" (153)
gender = "female" (122)

radiationtherapy = "no" (240)

ethnicity = "not hispanic or latino" (239)

pathologyMstage = "m0" (187)
pathologyMstage = "m1" (27)
pathologyMstage = "mx" (47)

Colon adenocarcinoma TCGA_COADREAD 367 histologicaltype = "rectal adenocarcinoma" (85)
histologicaltype = "colon adenocarcinoma" (236)
histologicaltype = "colon mucinous adenocarcinoma" (36)

tumortissuesite = "rectum" (90)
tumortissuesite = "colon" (275)

pathologyNstage = "n1" (62)
pathologyNstage = "n0" (201)
pathologyNstage = "n2" (36)

residualtumor = "r0" (239)
residualtumor = "rx" (28)

pathologyMstage = "mx" (61)
pathologyMstage = "m1" (37)
pathologyMstage = "m0" (251)

ethnicity = "not hispanic or latino" (316)

radiationtherapy = "no" (310)
radiationtherapy = "N/A" (42)

gender = "female" (163)
gender = "male" (204)

pathologyTstage = "t4a" (25)
pathologyTstage = "t3" (252)
pathologyTstage = "t2" (56)

Colon cancer GSE39582 556 tnm.m = "M0" (474)
tnm.m = "M1" (60)

chemotherapy.adjuvant = "N" (307)
chemotherapy.adjuvant = "Y" (233)

cit.molecularsubtype = "C3" (74)
cit.molecularsubtype = "C5" (150)
cit.molecularsubtype = "C1" (114)
cit.molecularsubtype = "C4" (58)
cit.molecularsubtype = "C6" (60)
cit.molecularsubtype = "C2" (100)

cin.status = "+" (347)
cin.status = "-" (107)

tumor.location = "distal" (337)
tumor.location = "proximal" (219)

chemotherapy.adjuvant.type = "5FU" (79)
chemotherapy.adjuvant.type = "FOLFOX" (23)
chemotherapy.adjuvant.type = "NA" (389)
chemotherapy.adjuvant.type = "FUFOL" (51)

Sex = "F" (249)
Sex = "M" (307)

tnm.n = "N2" (98)
tnm.n = "N0" (295)
tnm.n = "N1" (131)

kras.mutation = "M" (213)
kras.mutation = "WT" (322)

tp53.mutation = "M" (189)
tp53.mutation = "WT" (159)

tnm.t = "T2" (44)
tnm.t = "T4" (117)
tnm.t = "T3" (360)

braf.mutation = "WT" (453)
braf.mutation = "M" (49)

cimp.status = "-" (398)
cimp.status = "+" (88)

tnm.stage = "2" (258)
tnm.stage = "1" (32)
tnm.stage = "4" (59)
tnm.stage = "3" (203)

mmr.status = "dMMR" (71)
mmr.status = "pMMR" (439)

Diffuse large B cell lymphoma GSE10846 402 Clinicalinfo:Numberofextranodalsites = "1" (110)
Clinicalinfo:Numberofextranodalsites = "0" (233)

Clinicalinfo:Chemotherapy = "CHOP-Like Regimen" (175)
Clinicalinfo:Chemotherapy = "R-CHOP-Like Regimen" (227)

Gender = "male" (216)
Gender = "female" (169)

Clinicalinfo:Stage = "4" (115)
Clinicalinfo:Stage = "3" (94)
Clinicalinfo:Stage = "1" (66)
Clinicalinfo:Stage = "2" (121)

Clinicalinfo:ECOGperformancestatus = "0" (84)
Clinicalinfo:ECOGperformancestatus = "1" (208)
Clinicalinfo:ECOGperformancestatus = "2" (57)
Clinicalinfo:ECOGperformancestatus = "3" (28)

Diffuse large B cell lymphoma GSE32918 244 Sex = "male" (142)
Sex = "female" (102)

predictedclass = "GCB" (119)
predictedclass = "TypeIII" (46)
predictedclass = "ABC" (79)

Esophageal Carcinoma TCGA_ESCA 178 pathologyNstage = "n1" (67)
pathologyNstage = "n0" (72)

residualtumor = "r0" (131)

histologicaltype = "esophagus squamous cell carcinoma" (90)
histologicaltype = "esophagus adenocarcinoma nos" (88)

race = "asian" (44)
race = "white" (109)

gender = "male" (152)
gender = "female" (26)

pathologyTstage = "t2" (41)
pathologyTstage = "t1" (30)
pathologyTstage = "t3" (85)

pathologyMstage = "m0" (130)

radiationtherapy = "no" (119)
radiationtherapy = "yes" (43)

ethnicity = "not hispanic or latino" (84)

Glioblastoma GSE13041 191 HCcoded = "PN" (56)
HCcoded = "non-PN" (135)

HC = "PN" (56)
HC = "Pro" (48)
HC = "Mes" (69)

Gender = "M" (117)
Gender = "F" (74)

Glioblastoma Multiforme TCGA_GBM 144 gender = "male" (93)
gender = "female" (51)

race = "white" (130)

radiationtherapy = "yes" (121)

ethnicity = "not hispanic or latino" (119)

histologicaltype = "untreated primary (de novo) gbm" (142)

Glioma (high-grade ) GSE4271 77 Sex = "F" (25)
Sex = "M" (52)

whograde = "IV with necrosis" (50)
whograde = "III" (21)

Head and Neck Squamous Cell Carcinoma TCGA_HNSC 511 pathologyNstage = "n1" (67)
pathologyNstage = "nx" (75)
pathologyNstage = "n2c" (48)
pathologyNstage = "n0" (173)
pathologyNstage = "n2b" (95)

race = "white" (439)
race = "black or african american" (46)

histologicaltype = "head & neck squamous cell carcinoma" (500)

pathologyTstage = "tx" (39)
pathologyTstage = "t4a" (155)
pathologyTstage = "t2" (132)
pathologyTstage = "t1" (47)
pathologyTstage = "t3" (99)

gender = "female" (133)
gender = "male" (378)

ethnicity = "hispanic or latino" (24)
ethnicity = "not hispanic or latino" (451)

pathologicstage = "stage iii" (81)
pathologicstage = "stage i" (27)
pathologicstage = "stage iva" (245)
pathologicstage = "stage ii" (73)

radiationtherapy = "no" (155)
radiationtherapy = "yes" (296)

pathologyMstage = "m0" (181)
pathologyMstage = "mx" (61)

Kidney Chromophobe TCGA_KICH 65 pathologicstage = "stage ii" (25)

race = "white" (57)

pathologyMstage = "m0" (34)

pathologyNstage = "n0" (39)
pathologyNstage = "nx" (21)

gender = "male" (38)
gender = "female" (27)

Kidney Renal Clear Cell Carcinoma TCGA_KIRC 518 pathologyNstage = "n0" (231)
pathologyNstage = "nx" (271)

gender = "female" (179)
gender = "male" (339)

pathologyMstage = "m0" (411)
pathologyMstage = "m1" (79)

pathologicstage = "stage iii" (117)
pathologicstage = "stage iv" (84)
pathologicstage = "stage i" (259)
pathologicstage = "stage ii" (56)

radiationtherapy = "no" (137)

ethnicity = "hispanic or latino" (26)
ethnicity = "not hispanic or latino" (344)

race = "black or african american" (51)
race = "white" (452)

Kidney Renal Papillary Cell Carcinoma TCGA_KIRP 278 gender = "female" (71)
gender = "male" (207)

pathologyMstage = "mx" (164)
pathologyMstage = "m0" (91)

pathologicstage = "stage i" (166)
pathologicstage = "stage iii" (48)

radiationtherapy = "no" (206)

ethnicity = "not hispanic or latino" (232)

karnofskyperformancescore = "100" (37)

pathologyNstage = "n0" (45)
pathologyNstage = "nx" (205)
pathologyNstage = "n1" (23)

race = "white" (199)
race = "black or african american" (58)

Kidney papillary renal cell carcinoma TCGA_KIPAN 861 gender = "female" (277)
gender = "male" (584)

pathologyMstage = "m1" (90)
pathologyMstage = "mx" (199)
pathologyMstage = "m0" (536)

ethnicity = "hispanic or latino" (41)
ethnicity = "not hispanic or latino" (607)

pathologicstage = "stage ii" (101)
pathologicstage = "stage iii" (179)
pathologicstage = "stage iv" (105)
pathologicstage = "stage i" (445)

radiationtherapy = "no" (408)

pathologyNstage = "n0" (315)
pathologyNstage = "nx" (497)
pathologyNstage = "n1" (42)

histologicaltype = "kidney clear cell renal carcinoma" (518)
histologicaltype = "kidney papillary renal cell carcinoma" (278)
histologicaltype = "kidney chromophobe" (65)

race = "white" (708)
race = "black or african american" (113)

Liver Hepatocellular Carcinoma TCGA_LIHC 343 race = "asian" (148)
race = "white" (169)

histologicaltype = "hepatocellular carcinoma" (336)

residualtumor = "r0" (303)

pathologyNstage = "nx" (100)
pathologyNstage = "n0" (239)

radiationtherapy = "no" (323)

pathologicstage = "stage iiia" (60)
pathologicstage = "stage ii" (77)
pathologicstage = "stage i" (161)

ethnicity = "not hispanic or latino" (310)

pathologyMstage = "mx" (95)
pathologyMstage = "m0" (245)

pathologyTstage = "t2" (82)
pathologyTstage = "t1" (168)
pathologyTstage = "t3" (43)
pathologyTstage = "t3a" (26)

gender = "male" (233)
gender = "female" (110)

Lung Adenocarcinoma TCGA_LUAD 492 gender = "male" (229)
gender = "female" (263)

pathologyTstage = "t2a" (80)
pathologyTstage = "t1b" (53)
pathologyTstage = "t2b" (27)
pathologyTstage = "t1" (65)
pathologyTstage = "t1a" (46)
pathologyTstage = "t2" (157)
pathologyTstage = "t3" (43)

pathologyMstage = "m0" (326)
pathologyMstage = "mx" (138)

radiationtherapy = "no" (394)
radiationtherapy = "yes" (60)

ethnicity = "not hispanic or latino" (374)

pathologicstage = "stage iiia" (69)
pathologicstage = "stage iia" (48)
pathologicstage = "stage ib" (131)
pathologicstage = "stage ia" (129)
pathologicstage = "stage iib" (67)
pathologicstage = "stage iv" (25)

karnofskyperformancescore = "80" (28)
karnofskyperformancescore = "90" (31)
karnofskyperformancescore = "100" (43)

pathologyNstage = "n2" (68)
pathologyNstage = "n0" (318)
pathologyNstage = "n1" (93)

residualtumor = "r0" (328)
residualtumor = "rx" (23)

race = "white" (377)
race = "black or african american" (52)

Lung Adenocarcinoma GSE36471 115 tp53(0='wt':1='mutated') = "1" (31)
tp53(0='wt':1='mutated') = "0" (75)

subtype = "bronchioid" (46)
subtype = "magnoid" (40)
subtype = "squamoid" (29)

egfr(0='wt':1='mutated') = "0" (70)

grade = "3" (43)
grade = "2" (58)

kras(0='wt':01='mutated') = "0" (88)

Sex = "M" (49)
Sex = "F" (50)

Lung Squamous Cell Carcinoma TCGA_LUSC 474 radiationtherapy = "no" (363)
radiationtherapy = "yes" (53)

ethnicity = "not hispanic or latino" (301)

pathologyMstage = "m0" (394)
pathologyMstage = "mx" (73)

pathologyTstage = "t1" (50)
pathologyTstage = "t1a" (21)
pathologyTstage = "t2b" (32)
pathologyTstage = "t2a" (84)
pathologyTstage = "t4" (21)
pathologyTstage = "t2" (161)
pathologyTstage = "t1b" (37)
pathologyTstage = "t3" (68)

gender = "female" (122)
gender = "male" (352)

race = "black or african american" (24)
race = "white" (336)

histologicaltype = "lung squamous cell carcinoma- not otherwise specified (nos)" (453)

residualtumor = "r0" (378)
residualtumor = "rx" (21)

pathologyNstage = "n1" (125)
pathologyNstage = "n2" (39)
pathologyNstage = "n0" (300)

Lung adenocarcinoma stage I-II GSE31210 226 smokingstatus = "Ever-smoker" (111)
smokingstatus = "Never-smoker" (115)

gender = "female" (121)
gender = "male" (105)

pstageiorii = "II" (58)
pstageiorii = "I" (168)

genealterationstatus = "EGFR/KRAS/ALK -" (68)
genealterationstatus = "EGFR mutation +" (127)

relapse = "relapsed" (64)
relapse = "not relapsed" (162)

pathologicalstage = "IB" (54)
pathologicalstage = "II" (58)
pathologicalstage = "IA" (114)

myc = "Low" (207)

Lung cancer GSE30219 289 ptstage = "T1" (163)
ptstage = "T2" (68)
ptstage = "T4" (21)
ptstage = "T3" (31)

histology = "LCNE" (56)
histology = "BAS" (37)
histology = "ADC" (83)
histology = "SCC" (21)
histology = "CARCI" (24)
histology = "SQC" (61)

gender = "M" (247)
gender = "F" (42)

pnstage = "N2" (30)
pnstage = "N1" (52)
pnstage = "N0" (195)

Mesothelioma TCGA_MESO 84 gender = "male" (68)

pathologyTstage = "t2" (24)
pathologyTstage = "t3" (32)

pathologyMstage = "m0" (56)
pathologyMstage = "mx" (25)

radiationtherapy = "no" (60)
radiationtherapy = "yes" (24)

pathologicstage = "stage iii" (44)

pathologyNstage = "n2" (25)
pathologyNstage = "n0" (44)

histologicaltype = "biphasic mesothelioma" (22)
histologicaltype = "epithelioid mesothelioma" (56)

race = "white" (82)

Ovarian Cancer GSE13876 415
Ovarian Cancer (Epithelial) GSE49997 194 grade = "3" (143)
grade = "1&2" (50)

histology = "Non-serous" (23)
histology = "Serous" (171)

subclass = "2" (99)
subclass = "1" (95)

peritonealcarcinomatosis = "No" (57)
peritonealcarcinomatosis = "Yes" (137)

figograde = "III" (154)
figograde = "IV" (31)

residualtumor = "Yes" (57)
residualtumor = "No" (137)

Ovarian Serous Cystadenocarcinoma TCGA_OV 294 radiationtherapy = "no" (280)

ethnicity = "not hispanic or latino" (159)

tumortissuesite = "ovary" (291)

Pancreatic Adenocarcinoma TCGA_PAAD 172 pathologyMstage = "mx" (90)
pathologyMstage = "m0" (78)

radiationtherapy = "yes" (44)
radiationtherapy = "no" (116)

ethnicity = "not hispanic or latino" (125)

pathologicstage = "stage iib" (115)
pathologicstage = "stage iia" (28)

gender = "female" (78)
gender = "male" (94)

pathologyTstage = "t2" (21)
pathologyTstage = "t3" (139)

histologicaltype = "pancreas-adenocarcinoma-other subtype" (25)
histologicaltype = "pancreas-adenocarcinoma ductal type" (141)

race = "white" (151)

pathologyNstage = "n0" (47)
pathologyNstage = "n1" (116)

residualtumor = "r0" (100)
residualtumor = "r1" (53)

Pheochromocytoma and Paraganglioma TCGA_PCPG 172 race = "white" (133)

ethnicity = "not hispanic or latino" (126)

karnofskyperformancescore = "100" (46)

radiationtherapy = "no" (166)

histologicaltype = "pheochromocytoma" (143)
histologicaltype = "paraganglioma" (29)

gender = "male" (75)
gender = "female" (97)

tumortissuesite = "extra-adrenal site" (30)
tumortissuesite = "adrenal gland" (142)

Prostate Adenocarcinoma TCGA_PRAD 494 residualtumor = "r1" (146)
residualtumor = "r0" (314)

pathologyNstage = "n1" (79)
pathologyNstage = "n0" (343)

race = "white" (146)

gleasonscore = "8" (64)
gleasonscore = "7" (246)
gleasonscore = "9" (135)
gleasonscore = "6" (45)

histologicaltype = "prostate adenocarcinoma acinar type" (479)

pathologyTstage = "t3a" (158)
pathologyTstage = "t2c" (164)
pathologyTstage = "t3b" (133)

radiationtherapy = "yes" (59)
radiationtherapy = "no" (393)

vitalstatus = "0" (484)

Prostate Cancer GSE16560 281 major.gleason = "4" (104)
major.gleason = "3" (163)

gleason = "9" (49)
gleason = "6" (83)
gleason = "8" (27)
gleason = "7" (117)

batch = "4" (64)
batch = "3" (54)
batch = "6" (30)
batch = "5" (56)
batch = "1" (39)
batch = "2" (38)

minor.gleason = "3" (121)
minor.gleason = "4" (115)
minor.gleason = "5" (44)

extreme = "Indolent" (116)
extreme = "Lethal" (165)

fusion = "1" (46)
fusion = "0" (226)

Rectum Adenocarcinoma TCGA_READ 92 radiationtherapy = "no" (70)

ethnicity = "not hispanic or latino" (77)

pathologyMstage = "m0" (64)

pathologyTstage = "t3" (64)

gender = "female" (41)
gender = "male" (51)

histologicaltype = "rectal adenocarcinoma" (85)

residualtumor = "r0" (62)

pathologyNstage = "n0" (40)

Sarcoma TCGA_SARC 255 ethnicity = "not hispanic or latino" (220)

radiationtherapy = "no" (175)
radiationtherapy = "yes" (74)

race = "white" (224)

residualtumor = "r0" (153)
residualtumor = "rx" (25)
residualtumor = "r1" (69)

gender = "male" (116)
gender = "female" (139)

Skin Cutaneous Melanoma TCGA_SKCM 98 gender = "female" (39)
gender = "male" (59)

melanomaprimaryknown = "yes" (98)

pathologyMstage = "m0" (93)

race = "white" (90)

melanomaulceration = "yes" (72)

radiationtherapy = "no" (96)

ethnicity = "not hispanic or latino" (90)

Stomach Adenocarcinoma TCGA_STAD 375 pathologyNstage = "n0" (111)
pathologyNstage = "n3" (27)
pathologyNstage = "n2" (73)
pathologyNstage = "n1" (105)
pathologyNstage = "n3a" (42)

residualtumor = "r0" (308)

histologicaltype = "stomach intestinal adenocarcinoma tubular type" (72)
histologicaltype = "stomach adenocarcinoma not otherwise specified (nos)" (128)
histologicaltype = "stomach adenocarcinoma diffuse type" (65)
histologicaltype = "stomach intestinal adenocarcinoma not otherwise specified (nos)" (69)

race = "white" (234)
race = "asian" (81)

gender = "male" (246)
gender = "female" (129)

pathologyMstage = "m0" (338)
pathologyMstage = "m1" (24)

ethnicity = "not hispanic or latino" (269)

radiationtherapy = "yes" (68)
radiationtherapy = "no" (290)

Testicular Germ Cell Tumors TCGA_TGCT 130 radiationtherapy = "yes" (21)
radiationtherapy = "no" (109)

karnofskyperformancescore = "100" (56)
karnofskyperformancescore = "90" (39)

ethnicity = "not hispanic or latino" (109)

race = "white" (117)

pathologyMstage = "m0" (112)

pathologyTstage = "t2" (50)
pathologyTstage = "t1" (74)

pathologyNstage = "nx" (63)
pathologyNstage = "n0" (45)

Thymoma TCGA_THYM 118 tumortissuesite = "thymus" (91)
tumortissuesite = "anterior mediastinum" (27)

gender = "male" (63)
gender = "female" (55)

histologicaltype = "thymoma" (118)

ethnicity = "white" (98)

radiationtherapy = "no" (76)
radiationtherapy = "yes" (42)

race = "type ab" (33)
race = "type b2" (31)

Thyroid Carcinoma TCGA_THCA 498 race = "asian" (51)
race = "white" (329)
race = "black or african american" (27)

histologicaltype = "thyroid papillary carcinoma - classical/usual" (354)
histologicaltype = "thyroid papillary carcinoma - follicular (>= 99% follicular patterned)" (102)
histologicaltype = "thyroid papillary carcinoma - tall cell (>= 50% tall cell features)" (35)

multifocality = "unifocal" (263)
multifocality = "multifocal" (225)

residualtumor = "r0" (380)
residualtumor = "rx" (30)
residualtumor = "r1" (52)

pathologyNstage = "n1a" (91)
pathologyNstage = "n0" (226)
pathologyNstage = "n1b" (73)
pathologyNstage = "nx" (50)
pathologyNstage = "n1" (58)

radiationtherapy = "no" (179)
radiationtherapy = "yes" (305)

ethnicity = "not hispanic or latino" (359)
ethnicity = "hispanic or latino" (37)

pathologicstage = "stage i" (282)
pathologicstage = "stage iii" (109)
pathologicstage = "stage iva" (46)
pathologicstage = "stage ii" (51)

pathologyMstage = "mx" (209)
pathologyMstage = "m0" (279)

pathologyTstage = "t3" (169)
pathologyTstage = "t1" (43)
pathologyTstage = "t2" (164)
pathologyTstage = "t1b" (79)

radiationexposure = "no" (419)

gender = "male" (135)
gender = "female" (363)

extrathyroidalextension = "minimal (t3)" (133)
extrathyroidalextension = "none" (329)

Urothelial Carcinoma GSE32894 224 labeling_plate = "P5" (57)
labeling_plate = "P1" (45)
labeling_plate = "P2" (43)
labeling_plate = "P4" (59)

molecular_subtype = "MS2a.2" (32)
molecular_subtype = "MS1b" (63)
molecular_subtype = "MS2a.1" (24)
molecular_subtype = "MS1a" (48)
molecular_subtype = "MS2b.1" (31)

tumor_grade = "G3" (93)
tumor_grade = "G1" (45)
tumor_grade = "G2" (84)

gender = "M" (163)
gender = "F" (61)

tumor_stage = "T2" (40)
tumor_stage = "T1" (63)
tumor_stage = "Ta" (110)

Uterine Carcinosarcoma TCGA_UCS 55 histologicaltype = "uterine carcinosarcoma/ malignant mixed mullerian tumor (mmmt): nos" (23)

ethnicity = "not hispanic or latino" (42)

radiationtherapy = "no" (27)
radiationtherapy = "yes" (25)

race = "white" (43)

Uterine Corpus Endometrial Carcinoma TCGA_UCEC 162 histologicaltype = "serous endometrial adenocarcinoma" (54)
histologicaltype = "endometrioid endometrial adenocarcinoma" (96)

radiationtherapy = "no" (72)
radiationtherapy = "yes" (79)

tumortissuesite = "endometrial" (161)

residualtumor = "N/A" (30)
residualtumor = "r0" (107)

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